Function reference

All functions

collapse_pangoro()

Collapse PANGO lineage names

expand_pangoro()

Expand lineage from alias

fetch_pango_alias()

Fetch alias table from PANGO

fetch_pango_full_tbl()

Fetch full summary table from PANGO.

fetch_pango_notes()

Fetch PANGO lineage notes

fetch_pango_summary_tbl()

Fetch summary table from PANGO.

is_recombinant()

Detect recombinants

list_parents()

List parents of provided alias

pangoro()

Create pangoro object

print(<pangoro>)

Print pangoRo object

search_pangoro()

Search for alias within PANGO lineages

sort_pangoro()

Sort PANGO lineages

summary(<pangoro>)

Summarize pangoRo object